If you’ve been dreaming of a delicious, satisfying bagel that fits perfectly into your low carb lifestyle, then you are going to fall head over heels for this Low Carb Zucchini Bagels with Everything Bagel Seasoning Recipe. These bagels are not only incredibly flavorful thanks to the toasty, nutty crunch of everything bagel seasoning, but they also bring a wholesome twist by incorporating zucchini and mozzarella cheese. Each bite offers a perfect balance of tender, cheesy goodness with a lightly crisp crust, making them an ideal choice for breakfast, lunch, or even a quick snack. Whether you’re keto, watching carbs, or just curious about something fresh and wholesome, this recipe will quickly become one of your favorites to bake again and again.

Ingredients You’ll Need
Let’s talk about the beauty of this recipe: the ingredients are simple yet each plays a crucial role in crafting that perfect bagel texture and flavor. Trust me, these staples are easy to find and will come together effortlessly.
- 3 cups zucchini (finely shredded): Adds moisture and a subtle earthiness while keeping the carbs low.
- 1 ½ cup low moisture shredded mozzarella cheese: Brings the gooey, melty texture that holds everything together beautifully.
- 1/3 cup coconut flour: This low-carb flour adds structure and a light sweetness that complements zucchini perfectly.
- 1 tsp baking powder: Helps the bagels rise just enough to create a soft crumb and slight fluffiness.
- 2 large eggs: Acts as a binder, enriching the dough and adding protein.
- Everything bagel seasoning (for topping): The star topping that delivers an explosion of savory flavors and a satisfying crunch.
How to Make Low Carb Zucchini Bagels with Everything Bagel Seasoning Recipe
Step 1: Preheat and Prepare Your Baking Area
Start by preheating your oven to 400°F. Prepare a large baking sheet by lining it with a silicone baking mat—this ensures your bagels won’t stick and will bake evenly. Having everything ready means you can focus on the fun part: mixing and shaping your bagels.
Step 2: Prepare the Zucchini
Finely shred your zucchini, then wring it out in small batches using cheesecloth. This step is vital to remove excess moisture so that your bagels don’t turn out soggy. You should aim to have about 2 cups of tightly pressed zucchini for the best consistency.
Step 3: Combine Dry Ingredients and Eggs
In a large mixing bowl, toss together the zucchini, coconut flour, and baking powder. Crack in your eggs and mix everything thoroughly until the batter forms a cohesive mixture. This is where the base of your bagels starts to come together.
Step 4: Melt the Cheese
Place your shredded mozzarella in a microwave-safe bowl and heat in 20-second increments, stirring after each session, to melt it evenly without burning. You want it smooth and pliable, which will help bind the bagel dough perfectly.
Step 5: Blend Batter and Cheese
Combine the zucchini mixture with the melted cheese in a food processor and pulse until completely uniform. If you don’t have a processor, mixing by hand will work, though it requires a bit more love and muscle. This step ensures every bite has that perfect cheesy zucchini goodness.
Step 6: Shape Your Bagels
Using a 1/3 cup measuring cup, firmly pack the batter and invert it onto your prepared baking sheet. Shake gently to release the dough while maintaining the shape—this gives you a consistent size for all bagels to bake evenly.
Step 7: Create the Bagel Hole
Press your finger softly through the center of the dough mound to form a hole, then gradually widen and shape it into a donut form about the size of a cake donut. Smooth edges and tops with your fingers to ensure they look irresistible after baking.
Step 8: Sprinkle with Everything Bagel Seasoning
Generously sprinkle the tops of the formed bagels with everything bagel seasoning. This seasoning adds that irresistible classic flavor combination of toasted sesame seeds, poppy seeds, garlic, and onion that elevates these bagels to a whole new level.
Step 9: Bake Until Golden
Bake your bagels in the preheated oven for 22 to 28 minutes, or until the tops turn a gorgeous golden brown. The aroma will fill your kitchen, making the wait absolutely worth it.
Step 10: Cool and Store
Let your bagels cool completely on a rack before storing. Any leftovers can be refrigerated or frozen for later enjoyment. These bagels reheat beautifully, maintaining their soft interior and crisp exterior.
How to Serve Low Carb Zucchini Bagels with Everything Bagel Seasoning Recipe
Garnishes
The best part about these zucchini bagels is how versatile they are with toppings. Slather them with cream cheese, avocado spread, or your favorite nut butter. Fresh herbs like dill or chives make delightful garnishes that brighten each bite.
Side Dishes
Pair your bagels with a fresh green salad tossed in olive oil and lemon, or enjoy alongside crispy bacon or smoked salmon for a sophisticated brunch. They also make a great side for a hearty soup or cozy bowl of chili.
Creative Ways to Present
Make a bagel sandwich with layers of deli meat, cheese, and crunchy veggies, or turn them into mini sliders for a fun appetizer. They even work wonderfully as a base for keto-friendly pizzas—just pile on your favorite toppings and bake for a few extra minutes.
Make Ahead and Storage
Storing Leftovers
Store any leftover bagels in an airtight container in the refrigerator for up to 4 days. This keeps them fresh and prevents them from drying out, so you can enjoy their delightful texture later on.
Freezing
If you want to keep these low carb zucchini bagels for longer, freeze them by wrapping individually in plastic wrap and placing in a freezer-safe bag. They will keep well for up to 3 months without losing any flavorful charm.
Reheating
Reheat bagels in a toaster oven or standard oven at 350°F for about 5-8 minutes to revive that crispy crust and warm, melty center. Avoid microwaving if you want to maintain their texture, as it tends to make them chewy.
FAQs
Can I use a different type of flour instead of coconut flour?
Coconut flour works great here because it absorbs moisture well and keeps carbs low. While almond flour might work, the texture and moisture balance could change, so stick to coconut flour for the best bagel results.
Do I have to use everything bagel seasoning?
Not at all! While everything bagel seasoning is the perfect finishing touch adding savory depth, you can also sprinkle sesame seeds, poppy seeds, or even herbs like rosemary for a different twist.
Can I make these bagels dairy-free?
If you’re avoiding dairy, try substituting the mozzarella with a dairy-free cheese alternative that melts well. Keep in mind textures might vary slightly, but the bagels can still turn out delicious.
How long do these zucchini bagels last?
When stored properly in the fridge, these bagels stay fresh for up to 4 days. Freezing extends their shelf life to 3 months, so you can make a batch and enjoy them over time.
Is this recipe suitable for keto diets?
Absolutely! This Low Carb Zucchini Bagels with Everything Bagel Seasoning Recipe is crafted specifically to be low carb and keto-friendly, making it an excellent choice for those following a ketogenic lifestyle.
Final Thoughts
Once you try this Low Carb Zucchini Bagels with Everything Bagel Seasoning Recipe, I promise you’ll want to make it on repeat. It strikes the perfect balance of indulgence and health-consciousness that makes keto baking so rewarding. The stretchy mozzarella and fresh zucchini create a texture that’s truly special, while the everything bagel seasoning gives it that unbeatable flavor boost. Grab your baking tools, dive in, and enjoy every tasty bite—you deserve it!
Print
Low Carb Zucchini Bagels with Everything Bagel Seasoning Recipe
- Prep Time: 20 minutes
- Cook Time: 25 minutes
- Total Time: 45 minutes
- Yield: 6 bagels
- Category: Breakfast
- Method: Baking
- Cuisine: American
- Diet: Low Carb, Keto
Description
These low carb, keto-friendly zucchini bagels are a delicious and healthy alternative to traditional bagels. Made with shredded zucchini, mozzarella cheese, coconut flour, and eggs, they are easy to prepare and perfect for anyone following a low carb or keto diet. Topped with everything bagel seasoning, these bagels offer a flavorful, chewy texture with significantly fewer carbohydrates.
Ingredients
Bagel Dough
- 3 cups zucchini (finely shredded)
- 1 u00bd cup low moisture shredded mozzarella cheese
- 1/3 cup coconut flour
- 1 tsp baking powder
- 2 large eggs
Topping
- Everything bagel seasoning (for topping)
Instructions
- Preheat Oven: Preheat your oven to 400°F (204°C) and line a large baking sheet with a silicone baking mat to prevent sticking.
- Prepare Zucchini: Shred the zucchini finely and wring out excess moisture in small batches using a cheesecloth or clean kitchen towel until you have about 2 cups of dry shredded zucchini. This step ensures your bagels are not too wet and hold together well.
- Mix Dry Ingredients: In a large mixing bowl, combine shredded zucchini, coconut flour, baking powder, and eggs. Stir until all ingredients are evenly incorporated into a batter.
- Melt Cheese: Place the shredded mozzarella cheese in a microwave-safe bowl. Heat in the microwave in 20-second intervals, stirring after each until fully melted and smooth, approximately 1 minute total. Be careful to avoid burning the cheese.
- Combine All Ingredients: Add the zucchini mixture and melted cheese into a food processor. Pulse until the dough is evenly combined and forms a cohesive batter. Alternatively, you can mix thoroughly by hand, but it requires more effort.
- Shape Bagels: Use a 1/3 cup measuring cup to scoop the batter. Turn the cup upside down onto the prepared baking sheet and shake gently to release the batter in a round shape that holds its form.
- Create Bagel Hole: Using one finger, carefully poke a hole in the center of each dough round and gradually widen and stretch the hole to shape a bagel. Round the edges and top to resemble a cake donut, smoothing out the surface as much as possible.
- Add Seasoning: Generously sprinkle the tops of each bagel with everything bagel seasoning to enhance flavor.
- Bake: Place the baking sheet in the preheated oven and bake the bagels for 22 to 28 minutes, or until the tops turn golden brown.
- Store and Reheat: Store any leftover bagels in the refrigerator or freezer. Reheat leftovers in an oven or toaster oven for best texture and taste.
Notes
- Be sure to thoroughly wring out the zucchini to prevent soggy bagels.
- Melting the cheese in short intervals prevents burning and ensures smooth texture.
- Shaping the bagels properly helps them bake evenly and achieve the classic bagel look.
- Everything bagel seasoning can be substituted with sesame seeds, poppy seeds, or omit for a plain flavor.
- For a crispier crust, bake a few extra minutes, but watch closely to prevent burning.
- Bagels can be stored up to 5 days in the fridge or frozen for up to 1 month.

